Bio Expression Matrix Counts Ingest

Name: Bio Expression Matrix Counts Ingest
Author: gptomics

Checked

gptomics·vlatest·backend·MIT

This skill calculates Bio Expression Matrix Counts from ingested data, providing quantitative insights into biological processes.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

Run this in your project

terminal

$ npx skills add gptomics/bioskills --skill bio-expression-matrix-counts-ingest --full-depth -a claude-code

Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

gptomics

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned 2 Oct 2026

This skill passed all 6 checks. We read its files at one commit and looked for the things that make a skill dangerous to run — not for whether it works.

Declares what it does: passed
SKILL.md parses and declares a name and a description.
SKILL.md exists, its frontmatter parses, and it declares a name and a description.
No undeclared network calls: passed
Makes no network calls.
Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.
No obfuscated payloads: passed
No encoded or obfuscated payloads.
No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.
No credential access: passed
Reads no keys, tokens, keychains or credential files.
Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.
No pipe-to-shell installers: passed
No pipe-to-shell or download-and-run installers.
No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.
Pinned to a commit: passed
Scanned gptomics/bioskills at d91ed3d563.
The exact upstream commit SHA that was scanned is recorded, so the result refers to specific bytes.

Commit: d91ed3d563
Manifest: expression-matrix/counts-ingest/SKILL.md
Scanned: 3 files, 644 lines

This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.

What each check looks for →

About this skill

What it does

This skill ingests bio-expression matrix count data. It's designed to process and potentially analyze these datasets, likely for downstream tasks in bioinformatics or related fields. The specific analysis performed isn’t detailed but the core function is data input and preparation.

When to use it

When you need to feed expression matrix counts into a larger workflow.
To prepare data for machine learning models focused on gene expression.
For initial processing of raw sequencing data before further analysis steps.
Automating the import of count matrices from various sources.

Key capabilities

Ingestion of bio-expression matrix count data.

Example prompts

"Import this file containing gene expression counts."
"Process this matrix and prepare it for downstream analysis."
"Load the provided expression data into a suitable format."

Tips & gotchas

The skill's success depends on providing properly formatted input files; ensure your data adheres to expected standards. Specific data formats supported are not detailed in the source content.