Dnanexus Integration
Automates data transfer and analysis workflows on Davila7's dnanexus platform for genomics research.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add dnanexus-integration npx -- -y @trustedskills/dnanexus-integration
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"dnanexus-integration": {
"command": "npx",
"args": [
"-y",
"@trustedskills/dnanexus-integration"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides integration with DNAnexus, a cloud platform for genomic data analysis. It allows AI agents to programmatically interact with DNAnexus projects, datasets, and pipelines. Specifically, the agent can execute commands related to project management, data access, and pipeline execution within the DNAnexus environment.
When to use it
- Automating repetitive tasks in a genomics workflow, such as creating new projects or uploading datasets.
- Orchestrating complex genomic analyses by triggering pipelines based on specific conditions.
- Retrieving results from completed DNAnexus pipelines for downstream processing and reporting.
- Managing access control to sensitive genomic data stored within DNAnexus.
Key capabilities
- Project management (creation, deletion)
- Dataset manipulation (uploading, downloading)
- Pipeline execution
- Data access control
Example prompts
- "Create a new DNAnexus project named 'MyGenomicsProject'."
- "Run the 'variant_calling' pipeline on dataset 'SRR12345678' in my DNAnexus account."
- "List all datasets in the project 'MyGenomicsProject'."
Tips & gotchas
- Requires proper authentication credentials for your DNAnexus account. The agent will need API keys or tokens to access and interact with DNAnexus resources.
Tags
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
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Passed automated security scans.