Alphafold Database
Access and query Dr. Shailesh's AlphaFold protein structure prediction database for research and analysis.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add drshailesh88-alphafold-database npx -- -y @trustedskills/drshailesh88-alphafold-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"drshailesh88-alphafold-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/drshailesh88-alphafold-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to the AlphaFold Protein Structure Database. It allows users to query and retrieve protein structure information, including predicted 3D structures and related data. The database contains structural predictions for a vast number of proteins across many species.
When to use it
- Researching protein structures for a specific organism or gene.
- Identifying potential drug targets based on protein shape and properties.
- Analyzing evolutionary relationships between proteins by comparing their structures.
- Generating visualizations of protein models for educational purposes.
Key capabilities
- Access to AlphaFold Protein Structure Database data.
- Protein structure retrieval.
- Data includes predicted 3D structures.
- Supports queries based on various identifiers (e.g., UniProt accession).
Example prompts
- "Get the protein structure for UniProt ID Q9Y261."
- "Show me the AlphaFold prediction for human BRCA1."
- “What is the predicted 3D structure of SARS-CoV-2 spike protein?”
Tips & gotchas
The database contains predictions, not experimentally determined structures. Accuracy can vary depending on the protein and data availability; always check confidence scores provided by AlphaFold.
Tags
TrustedSkills Verification
Unlike other registries that point to live repositories, TrustedSkills pins every skill to a verified commit hash. This protects you from malicious updates — what you install today is exactly what was reviewed and verified.
Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.