Metabolomics Workbench Database
Access and query Dr. Shailesh's curated metabolomics data workbench for compound IDs, pathways, and experimental details.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add drshailesh88-metabolomics-workbench-database npx -- -y @trustedskills/drshailesh88-metabolomics-workbench-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"drshailesh88-metabolomics-workbench-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/drshailesh88-metabolomics-workbench-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to the Metabolomics Workbench database, a public repository for metabolomics data. It allows users to query and retrieve experimental datasets, sample metadata, and associated analytical results. The database contains diverse metabolomic studies across various biological applications and instrument platforms.
When to use it
- Literature Review: Quickly find metabolomics datasets relevant to specific research topics or diseases.
- Data Integration: Combine data from Metabolomics Workbench with your own experimental results for comparative analysis.
- Reproducibility Studies: Access raw data and analytical pipelines to reproduce published findings.
- Secondary Data Analysis: Explore existing datasets for new insights or validation of hypotheses.
Key capabilities
- Access to Metabolomics Workbench database content.
- Querying experimental datasets.
- Retrieval of sample metadata.
- Access to associated analytical results.
Example prompts
- "Find metabolomics studies related to Alzheimer's disease."
- "Retrieve the sample metadata for dataset ID HMDBXXXXX."
- "Show me all datasets acquired using LC-MS."
Tips & gotchas
- Familiarity with Metabolomics Workbench data structure and terminology is helpful.
- The database contains a large volume of data; specific queries are recommended to narrow results.
Tags
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