Reactome Database
Access and visualize Reactome pathway data via a user-friendly interface built by drshailesh88.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add drshailesh88-reactome-database npx -- -y @trustedskills/drshailesh88-reactome-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"drshailesh88-reactome-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/drshailesh88-reactome-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to the Reactome Pathway Database, a curated resource of biological pathways. It allows AI agents to query and retrieve information about genes, proteins, and their relationships within these pathways. The database is useful for understanding complex biological processes and identifying potential therapeutic targets.
When to use it
- Biomedical Research: To explore the pathways involved in a specific disease or biological process.
- Drug Discovery: To identify potential drug targets by analyzing pathway components.
- Genomic Data Analysis: To interpret genomic data within the context of known biological pathways.
- Literature Review: To quickly find relevant pathways and associated genes/proteins mentioned in scientific publications.
Key capabilities
- Access to Reactome Pathway Database content
- Gene/Protein pathway retrieval
- Pathway relationship analysis
Example prompts
- "What pathways does the gene BRCA1 participate in?"
- "Show me all proteins involved in apoptosis."
- "Retrieve information about the PI3K/AKT/mTOR signaling pathway."
Tips & gotchas
The Reactome database is extensive, so be specific with your queries to get targeted results. Understanding basic biological terminology will improve the quality of your prompts and the usefulness of the responses.
Tags
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
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Passed automated security scans.