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Galaxy Tool Wrapping

Checked
delphine-l·vlatest·agents

This skill wraps external tools within the Galaxy platform, streamlining workflows and enabling seamless integration of diverse functionalities.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add delphine-l/claude_global --skill galaxy-tool-wrapping -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

delphine-l

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned

This skill passed all 6 checks. We read its files at one commit and looked for the things that make a skill dangerous to run — not for whether it works.

  • Declares what it does: passed

    SKILL.md parses and declares a name and a description.

    SKILL.md exists, its frontmatter parses, and it declares a name and a description.

  • No undeclared network calls: passed

    Makes no network calls.

    Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.

  • No obfuscated payloads: passed

    No encoded or obfuscated payloads.

    No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.

  • No credential access: passed

    Reads no keys, tokens, keychains or credential files.

    Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.

  • No pipe-to-shell installers: passed

    No pipe-to-shell or download-and-run installers.

    No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.

  • Pinned to a commit: passed

    Scanned delphine-l/claude_global at 71c292e8aa.

    The exact upstream commit SHA that was scanned is recorded, so the result refers to specific bytes.

Commit
71c292e8aa
Manifest
skills/galaxy/tool-wrapping/SKILL.md
Scanned
5 files, 2,338 lines
This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.
What each check looks for →

About this skill

What it does

This skill allows AI agents to wrap and execute tools from the Galaxy platform. It provides a standardized interface for interacting with these tools, enabling complex workflows and data processing within an AI agent's capabilities. The tool wrapping functionality simplifies integration and reduces the need for direct API calls to individual Galaxy tools.

When to use it

  • Bioinformatics Analysis: Automate tasks like variant calling or gene expression analysis using Galaxy’s extensive suite of bioinformatics tools.
  • Data Transformation Pipelines: Chain together multiple Galaxy tools to perform complex data cleaning, transformation, and enrichment processes.
  • Reproducible Research Workflows: Execute pre-defined Galaxy workflows as part of an automated research pipeline.
  • Batch Processing: Run the same set of Galaxy tools on a large number of input files or datasets.

Key capabilities

  • Tool wrapping for Galaxy platform
  • Workflow execution
  • Standardized interface for Galaxy tool interaction
  • Data processing and transformation

Example prompts

  • "Run the 'GalaxyTools/STAR' tool with these parameters: [parameters]"
  • "Execute workflow 'my_workflow' in Galaxy."
  • "Wrap the 'GalaxyTools/samtools' tool for use in my agent."

Tips & gotchas

  • Requires familiarity with Galaxy tools and workflows.
  • Ensure that the necessary Galaxy credentials are configured correctly for the AI agent to authenticate and execute tools.