Galaxy Tool Wrapping
This skill wraps external tools within the Galaxy platform, streamlining workflows and enabling seamless integration of diverse functionalities.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add galaxy-tool-wrapping npx -- -y @trustedskills/galaxy-tool-wrapping
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"galaxy-tool-wrapping": {
"command": "npx",
"args": [
"-y",
"@trustedskills/galaxy-tool-wrapping"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill allows AI agents to wrap and execute tools from the Galaxy platform. It provides a standardized interface for interacting with these tools, enabling complex workflows and data processing within an AI agent's capabilities. The tool wrapping functionality simplifies integration and reduces the need for direct API calls to individual Galaxy tools.
When to use it
- Bioinformatics Analysis: Automate tasks like variant calling or gene expression analysis using Galaxy’s extensive suite of bioinformatics tools.
- Data Transformation Pipelines: Chain together multiple Galaxy tools to perform complex data cleaning, transformation, and enrichment processes.
- Reproducible Research Workflows: Execute pre-defined Galaxy workflows as part of an automated research pipeline.
- Batch Processing: Run the same set of Galaxy tools on a large number of input files or datasets.
Key capabilities
- Tool wrapping for Galaxy platform
- Workflow execution
- Standardized interface for Galaxy tool interaction
- Data processing and transformation
Example prompts
- "Run the 'GalaxyTools/STAR' tool with these parameters: [parameters]"
- "Execute workflow 'my_workflow' in Galaxy."
- "Wrap the 'GalaxyTools/samtools' tool for use in my agent."
Tips & gotchas
- Requires familiarity with Galaxy tools and workflows.
- Ensure that the necessary Galaxy credentials are configured correctly for the AI agent to authenticate and execute tools.
Tags
TrustedSkills Verification
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.