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Biopython

Checked
jackspace·vlatest·backend·MIT

This Biopython skill leverages Python libraries for bioinformatics tasks like sequence analysis, simplifying genomic data manipulation and research.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add jackspace/claudeskillz --skill biopython -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

jackspace

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned

This skill passed all 6 checks. We read its files at one commit and looked for the things that make a skill dangerous to run — not for whether it works.

  • Declares what it does: passed

    SKILL.md parses and declares a name and a description.

    SKILL.md exists, its frontmatter parses, and it declares a name and a description.

  • No undeclared network calls: passed

    Makes no network calls.

    Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.

  • No obfuscated payloads: passed

    No encoded or obfuscated payloads.

    No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.

  • No credential access: passed

    Reads no keys, tokens, keychains or credential files.

    Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.

  • No pipe-to-shell installers: passed

    No pipe-to-shell or download-and-run installers.

    No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.

  • Pinned to a commit: passed

    Scanned jackspace/claudeskillz at aef4e299d1.

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Commit
aef4e299d1
Manifest
skills/scientific-pkg-biopython/SKILL.md
Scanned
2 files, 427 lines
This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.
What each check looks for →

About this skill

What it does

This skill provides access to Biopython, a powerful suite of tools for computational biology. It allows AI agents to analyze biological sequences (DNA, RNA, protein), perform sequence alignments, and work with phylogenetic trees. Specifically, the agent can parse common bioinformatics file formats like FASTA and GenBank, and use these parsed structures in subsequent operations.

When to use it

  • Analyzing DNA/RNA Sequences: You need to extract information from a gene sequence or identify potential mutations.
  • Protein Sequence Alignment: Compare protein sequences to understand evolutionary relationships or predict function.
  • Phylogenetic Tree Manipulation: Construct and analyze phylogenetic trees based on sequence data.
  • Bioinformatics Data Parsing: Convert bioinformatics file formats (e.g., FASTA, GenBank) into usable data structures for further processing.

Key capabilities

  • Parsing of common bioinformatics file formats (FASTA, GenBank).
  • Sequence alignment algorithms.
  • Phylogenetic tree analysis tools.
  • DNA/RNA sequence manipulation and analysis.
  • Protein sequence analysis.

Example prompts

  • "Parse this FASTA file and tell me the length of each sequence."
  • "Align these two protein sequences using a global alignment algorithm."
  • "Create a phylogenetic tree from this set of DNA sequences."

Tips & gotchas

  • Requires familiarity with basic bioinformatics concepts.
  • The agent may need specific file paths or URLs to access data files.