Deeptools
Deeptools analyzes complex data sets to uncover hidden patterns and insights, boosting decision-making efficiency.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add jackspace-deeptools npx -- -y @trustedskills/jackspace-deeptools
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"jackspace-deeptools": {
"command": "npx",
"args": [
"-y",
"@trustedskills/jackspace-deeptools"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to DeepTools, a suite of tools for analyzing and interpreting genomic data. It allows AI agents to perform tasks like calculating coverage statistics, identifying variant frequencies, and generating visualizations from sequencing data. The skill aims to simplify complex bioinformatics workflows within an AI agent environment.
When to use it
- Analyzing whole genome sequencing (WGS) data to identify potential genetic variants.
- Calculating read depth coverage across a genomic region of interest.
- Generating plots and reports summarizing key metrics from sequencing experiments.
- Automating repetitive bioinformatics tasks within a research pipeline.
Key capabilities
- Coverage statistics calculation
- Variant frequency identification
- Visualization generation
- Bioinformatics workflow automation
Example prompts
- "Calculate the read depth coverage for chromosome 1 in this BAM file."
- "Generate a plot showing variant frequencies across this genomic region."
- "Analyze this sequencing data and identify any regions with unusually high or low coverage."
Tips & gotchas
This skill requires familiarity with genomic data formats (e.g., BAM, VCF). Ensure the AI agent has access to the necessary input files before execution.
Tags
TrustedSkills Verification
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.