Chembl Database
Access and query ChEMBL's vast chemical and biological data for compound properties, bioactivity, and targets.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add jimmc414-chembl-database npx -- -y @trustedskills/jimmc414-chembl-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"jimmc414-chembl-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/jimmc414-chembl-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to and querying capabilities of the ChEMBL database. ChEMBL is a curated, open-source database of bioactive molecules with drug-like properties. It contains data on compounds, targets, assays, and associated activities, enabling researchers to explore chemical space and identify potential therapeutic candidates.
When to use it
- Drug Discovery Research: Identify compounds that inhibit or activate specific biological targets.
- Chemical Informatics Analysis: Analyze trends in compound activity across different assay types.
- Target Validation: Find existing data on a target of interest, including known inhibitors and assays.
- Bioactivity Prediction: Use the database as a reference for predicting the bioactivity of novel compounds.
Key capabilities
- Access to ChEMBL compound data
- Querying by chemical structure or name
- Retrieval of assay results for specific targets
- Data filtering based on activity values
Example prompts
- "Find all compounds that inhibit protein kinase CK2 with an IC50 less than 10 micromolar."
- "What are the known assays for target EGFR?"
- "Give me a list of compounds similar to aspirin."
Tips & gotchas
The ChEMBL database is very large. Be specific in your queries to avoid overwhelming results and ensure efficient data retrieval.
Tags
TrustedSkills Verification
Unlike other registries that point to live repositories, TrustedSkills pins every skill to a verified commit hash. This protects you from malicious updates — what you install today is exactly what was reviewed and verified.
Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.