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Clinpgx Database

Listed
jimmc414·vlatest·database

Accesses and retrieves clinical pharmacogenomics (PGx) data from a specialized database for personalized medication guidance.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add jimmc414/kosmos --skill clinpgx-database -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

jimmc414

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned

This skill failed 1 of 6 checks. A failure is not proof of bad intent; it means something in the code needs a human to look at it before you run it.

  • No undeclared network calls: failed

    Contacts 1 host that is neither well-known infrastructure nor declared in the skill's frontmatter: api.clinpgx.org.

    Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.

    Hosts contacted

    api.clinpgx.orgundeclared

    What it found (3 of 55)

    • kosmos-claude-scientific-skills/scientific-skills/clinpgx-database/SKILL.md:63contacts api.clinpgx.org
      response = requests.get("https://api.clinpgx.org/v1/gene/CYP2D6")
    • kosmos-claude-scientific-skills/scientific-skills/clinpgx-database/SKILL.md:67contacts api.clinpgx.org
      response = requests.get("https://api.clinpgx.org/v1/gene",
    • kosmos-claude-scientific-skills/scientific-skills/clinpgx-database/SKILL.md:85contacts api.clinpgx.org
      response = requests.get("https://api.clinpgx.org/v1/chemical/PA448515")  # Warfarin

  • Declares what it does: passed

    SKILL.md parses and declares a name and a description.

    SKILL.md exists, its frontmatter parses, and it declares a name and a description.

  • No obfuscated payloads: passed

    No encoded or obfuscated payloads.

    No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.

  • No credential access: passed

    Reads no keys, tokens, keychains or credential files.

    Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.

  • No pipe-to-shell installers: passed

    No pipe-to-shell or download-and-run installers.

    No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.

  • Pinned to a commit: passed

    Scanned jimmc414/kosmos at 6cfe7f690d.

    The exact upstream commit SHA that was scanned is recorded, so the result refers to specific bytes.

Commit
6cfe7f690d
Manifest
kosmos-claude-scientific-skills/scientific-skills/clinpgx-database/SKILL.md
Scanned
3 files, 1,736 lines
This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.
What each check looks for →

About this skill

What it does

This skill allows AI agents to interact with and query clinical pharmacogenomics (PGx) databases. It can retrieve information about gene variants, drug interactions, and associated phenotypes based on user requests. The agent can also perform searches for specific genes or drugs within the PGx database.

When to use it

  • A researcher needs to quickly find out which CYP2C19 genotypes are associated with altered clopidogrel response.
  • A clinician wants to check if a patient's genetic profile indicates increased risk of adverse drug reactions for a particular medication.
  • A pharmacist is verifying the PGx implications of a new prescription before dispensing it.
  • An AI assistant is helping users understand their personalized medicine reports and identify potential drug-gene interactions.

Key capabilities

  • Query clinical pharmacogenomics (PGx) databases
  • Retrieve information on gene variants
  • Identify drug interactions
  • Search for specific genes or drugs
  • Access associated phenotypes

Example prompts

  • "What are the clinically relevant genotypes for CYP2D6 and their impact on codeine metabolism?"
  • "Find all PGx associations for warfarin."
  • “Retrieve information about HLA-B*57:01 and its relationship to abacavir hypersensitivity.”

Tips & gotchas

The skill's accuracy depends on the completeness and accuracy of the underlying clinical pharmacogenomics database. Results should always be reviewed by a qualified healthcare professional.