Metabolomics Workbench Database
Access and query a comprehensive metabolomics data workbench database curated by jimmc414 for compound identification and analysis.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add jimmc414-metabolomics-workbench-database npx -- -y @trustedskills/jimmc414-metabolomics-workbench-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"jimmc414-metabolomics-workbench-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/jimmc414-metabolomics-workbench-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to the Metabolomics Workbench database, enabling queries and retrieval of metabolomics data. It allows users to search for datasets based on various criteria and download associated experimental metadata. This is a specialized resource for researchers in metabolomics and related fields.
When to use it
- Finding publicly available metabolomics datasets for validation or comparison purposes.
- Identifying experiments with specific sample types, instruments, or analytical methods.
- Accessing experimental design information and processing parameters associated with published metabolomics studies.
- Discovering data related to a particular disease or biological pathway.
Key capabilities
- Dataset search based on keywords, species, instrument type, and other metadata.
- Data download in various formats.
- Retrieval of experimental design information.
- Access to associated publications.
Example prompts
- "Find metabolomics datasets from human plasma samples."
- "Show me experiments using LC-MS for lipid analysis."
- "What are the available datasets related to Alzheimer's disease?"
Tips & gotchas
The Metabolomics Workbench database contains specialized data, so familiarity with metabolomics terminology is helpful. Results may require careful interpretation and validation based on experimental context.
Tags
TrustedSkills Verification
Unlike other registries that point to live repositories, TrustedSkills pins every skill to a verified commit hash. This protects you from malicious updates — what you install today is exactly what was reviewed and verified.
Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.