Reactome Database
Access and visualize Reactome pathway data via a user-friendly interface built by jimmc414.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add jimmc414-reactome-database npx -- -y @trustedskills/jimmc414-reactome-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"jimmc414-reactome-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/jimmc414-reactome-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to and querying capabilities of the Reactome Pathway Database. It allows users to retrieve information about biological pathways, genes, proteins, and their relationships within those pathways. The database is a manually curated resource focused on human biology but includes data from other organisms as well.
When to use it
- Research: Investigate specific biological pathways involved in a disease or process.
- Drug Discovery: Identify potential drug targets by analyzing pathway components and interactions.
- Education: Visualize and understand complex biological processes for students or researchers.
- Data Integration: Enrich existing datasets with Reactome pathway annotations.
Key capabilities
- Pathway search
- Gene/Protein search
- Relationship retrieval within pathways
- Access to curated biological data
Example prompts
- "Show me the Reactome pathways involved in apoptosis."
- "What genes are associated with the 'PI3K/AKT/mTOR signaling pathway'?"
- "Retrieve all proteins that interact with TP53 according to Reactome."
Tips & gotchas
The Reactome database is extensive; be specific with your queries to narrow down results. Understanding basic biological terminology will improve the quality of your interactions with this skill.
Tags
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
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