Alphafold Database
Helps with AI, database as part of working with databases and data persistence workflows.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add k-dense-ai-alphafold-database npx -- -y @trustedskills/k-dense-ai-alphafold-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"k-dense-ai-alphafold-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/k-dense-ai-alphafold-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to the AlphaFold Protein Structure Database, a comprehensive resource of predicted 3D structures for millions of proteins. It allows users to query and retrieve information about protein structures, including sequence identity, resolution, and confidence scores. The database is regularly updated with new predictions, offering insights into protein function and design.
When to use it
- Researching Protein Structure: Investigate the predicted structure of a specific protein for biological or pharmaceutical research.
- Understanding Evolutionary Relationships: Compare protein sequences and structures across different species to understand evolutionary relationships.
- Drug Discovery: Identify potential drug targets by analyzing protein structures and binding sites.
- Protein Engineering: Design novel proteins with desired properties based on structural information.
Key capabilities
- Access to AlphaFold Protein Structure Database
- Protein structure retrieval
- Sequence identity analysis
- Resolution and confidence score reporting
- Regular database updates
Example prompts
- "Retrieve the predicted structure for human hemoglobin."
- "Show me proteins with a sequence identity of over 90% to UniProt ID P01013."
- "What is the resolution and pLDDT score for the structure of SARS-CoV-2 spike protein?"
Tips & gotchas
The database contains predicted structures, not experimentally determined ones. Always consider the confidence scores (pLDDT) when interpreting results; lower scores indicate less reliable predictions.
Tags
TrustedSkills Verification
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.