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Biopython

Checked
microck·vlatest·other

This Biopython skill leverages Python libraries for bioinformatics tasks like sequence analysis, enabling efficient biological data processing and research.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add microck/ordinary-claude-skills --skill biopython -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

microck

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned

This skill passed all 6 checks. We read its files at one commit and looked for the things that make a skill dangerous to run — not for whether it works.

  • Declares what it does: passed

    SKILL.md parses and declares a name and a description.

    SKILL.md exists, its frontmatter parses, and it declares a name and a description.

  • No undeclared network calls: passed

    Only contacts known or declared hosts: github.com.

    Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.

    Hosts contacted

    github.comsource host

  • No obfuscated payloads: passed

    No encoded or obfuscated payloads.

    No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.

  • No credential access: passed

    Reads no keys, tokens, keychains or credential files.

    Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.

  • No pipe-to-shell installers: passed

    No pipe-to-shell or download-and-run installers.

    No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.

  • Pinned to a commit: passed

    Scanned microck/ordinary-claude-skills at 1056d293d4.

    The exact upstream commit SHA that was scanned is recorded, so the result refers to specific bytes.

Commit
1056d293d4
Manifest
skills_all/biopython/SKILL.md
Scanned
6 files, 1,230 lines
Copies in repo
3 — all of them scanned
This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.
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About this skill

What it does

This skill provides access to Biopython, a powerful suite of tools for computational biology. It allows AI agents to analyze biological sequences like DNA and protein, perform sequence alignments, and work with phylogenetic trees. This capability enables tasks ranging from simple sequence manipulation to complex bioinformatics analyses.

When to use it

  • Sequence Analysis: When you need an agent to identify patterns or motifs within a DNA or protein sequence.
  • Phylogenetic Tree Construction: To build evolutionary relationships between different species based on their genetic data.
  • Alignment Tasks: For aligning multiple sequences to find conserved regions and understand functional similarities.
  • Bioinformatics Research: To assist with research projects involving biological data analysis.

Key capabilities

  • Sequence manipulation (DNA, RNA, protein)
  • Sequence alignment algorithms
  • Phylogenetic tree construction and visualization
  • Biological database access and parsing

Example prompts

  • "Analyze this DNA sequence: [sequence] and identify any potential gene markers."
  • "Create a phylogenetic tree based on these sequences: [sequences]."
  • "Align the following protein sequences: [sequences] to find conserved regions."

Tips & gotchas

  • Requires familiarity with biological data formats (e.g., FASTA, GenBank).
  • Computational biology can be resource-intensive; complex analyses may take time.