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Metabolomics Workbench Database

Listed
microck·vlatest·database

Access and query microck's curated metabolomics data, workflows, and tools for streamlined microbial research analysis.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add microck/ordinary-claude-skills --skill metabolomics-workbench-database -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

microck

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned

This skill failed 1 of 6 checks. A failure is not proof of bad intent; it means something in the code needs a human to look at it before you run it.

  • No undeclared network calls: failed

    Contacts 1 host that is neither well-known infrastructure nor declared in the skill's frontmatter: www.metabolomicsworkbench.org.

    Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.

    Hosts contacted

    www.metabolomicsworkbench.orgundeclaredgithub.comsource host

    What it found (3 of 56)

    • skills_all/metabolomics-workbench-database/SKILL.md:33contacts www.metabolomicsworkbench.org
      response = requests.get('https://www.metabolomicsworkbench.org/rest/compound/pubchem_cid/5281365/all/json')
    • skills_all/metabolomics-workbench-database/SKILL.md:36contacts www.metabolomicsworkbench.org
      response = requests.get('https://www.metabolomicsworkbench.org/rest/compound/regno/11/png')
    • skills_all/metabolomics-workbench-database/SKILL.md:39contacts www.metabolomicsworkbench.org
      response = requests.get('https://www.metabolomicsworkbench.org/rest/compound/regno/11/name/json')

  • Declares what it does: passed

    SKILL.md parses and declares a name and a description.

    SKILL.md exists, its frontmatter parses, and it declares a name and a description.

  • No obfuscated payloads: passed

    No encoded or obfuscated payloads.

    No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.

  • No credential access: passed

    Reads no keys, tokens, keychains or credential files.

    Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.

  • No pipe-to-shell installers: passed

    No pipe-to-shell or download-and-run installers.

    No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.

  • Pinned to a commit: passed

    Scanned microck/ordinary-claude-skills at 1056d293d4.

    The exact upstream commit SHA that was scanned is recorded, so the result refers to specific bytes.

Commit
1056d293d4
Manifest
skills_all/metabolomics-workbench-database/SKILL.md
Scanned
4 files, 476 lines
Copies in repo
3 — all of them scanned
This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.
What each check looks for →

About this skill

What it does

This skill provides access to the Metabolomics Workbench database. It allows users to query and retrieve metabolomics data, including experimental designs, raw files, and processed results, facilitating research in metabolic pathways and disease mechanisms. The database contains a wide range of datasets from various studies and laboratories.

When to use it

  • Researchers need to find existing metabolomics datasets for comparison or validation.
  • Data analysts require access to raw data for further processing and analysis.
  • Students are learning about metabolomics and want to explore publicly available datasets.
  • Scientists are seeking specific experimental designs or methodologies used in previous studies.

Key capabilities

  • Database querying
  • Dataset retrieval
  • Access to experimental design information
  • Raw data access
  • Processed results access

Example prompts

  • "Find metabolomics datasets related to Alzheimer's disease."
  • "Retrieve the raw data for study ID HMDBXXXXX."
  • "Show me the experimental design used in dataset XYZ."

Tips & gotchas

The Metabolomics Workbench database can be complex. Familiarity with metabolomics terminology and experimental designs will improve query effectiveness.