Metabolomics Workbench Database
Access and query microck's curated metabolomics data, workflows, and tools for streamlined microbial research analysis.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add microck-metabolomics-workbench-database npx -- -y @trustedskills/microck-metabolomics-workbench-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"microck-metabolomics-workbench-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/microck-metabolomics-workbench-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to the Metabolomics Workbench database. It allows users to query and retrieve metabolomics data, including experimental designs, raw files, and processed results, facilitating research in metabolic pathways and disease mechanisms. The database contains a wide range of datasets from various studies and laboratories.
When to use it
- Researchers need to find existing metabolomics datasets for comparison or validation.
- Data analysts require access to raw data for further processing and analysis.
- Students are learning about metabolomics and want to explore publicly available datasets.
- Scientists are seeking specific experimental designs or methodologies used in previous studies.
Key capabilities
- Database querying
- Dataset retrieval
- Access to experimental design information
- Raw data access
- Processed results access
Example prompts
- "Find metabolomics datasets related to Alzheimer's disease."
- "Retrieve the raw data for study ID HMDBXXXXX."
- "Show me the experimental design used in dataset XYZ."
Tips & gotchas
The Metabolomics Workbench database can be complex. Familiarity with metabolomics terminology and experimental designs will improve query effectiveness.
Tags
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Security Audits
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| Snyk | Pass |
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