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Reactome Database

Listed
microck·vlatest·database

Visualize and explore Reactome pathway data directly within your microck environment for rapid biological insights.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add microck/ordinary-claude-skills --skill reactome-database -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

microck

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned

This skill failed 1 of 6 checks. A failure is not proof of bad intent; it means something in the code needs a human to look at it before you run it.

  • Declares what it does: failed

    No SKILL.md was found in the skill's directory.

    SKILL.md exists, its frontmatter parses, and it declares a name and a description.

  • No undeclared network calls: passed

    Makes no network calls.

    Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.

  • No obfuscated payloads: passed

    No encoded or obfuscated payloads.

    No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.

  • No credential access: passed

    Reads no keys, tokens, keychains or credential files.

    Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.

  • No pipe-to-shell installers: passed

    No pipe-to-shell or download-and-run installers.

    No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.

  • Pinned to a commit: passed

    Scanned microck/ordinary-claude-skills at 1056d293d4.

    The exact upstream commit SHA that was scanned is recorded, so the result refers to specific bytes.

Commit
1056d293d4
Manifest
skills_all/claude-scientific-skills/scientific-skills/reactome-database/SKILL.md
Scanned
0 files
This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.
What each check looks for →

About this skill

What it does

This skill provides access to and querying capabilities for the Reactome database, a curated knowledgebase of biological pathways. It allows users to retrieve information about genes, proteins, pathways, and their relationships within biological processes. The skill can be used to explore complex biological systems and identify potential targets for research or drug development.

When to use it

  • Researching gene function: Investigate the role of a specific gene in a particular pathway.
  • Understanding disease mechanisms: Explore how disruptions in Reactome pathways contribute to disease progression.
  • Identifying drug targets: Discover potential therapeutic interventions by targeting key nodes within biological pathways.
  • Analyzing protein interactions: Determine which proteins interact with each other and participate in shared pathways.

Key capabilities

  • Querying the Reactome database for specific genes or proteins.
  • Retrieving pathway information associated with a given gene or protein.
  • Exploring relationships between biological entities within Reactome.

Example prompts

  • "What pathways does the BRCA1 gene participate in?"
  • "Show me all proteins involved in the MAPK signaling pathway."
  • “Find genes related to apoptosis.”

Tips & gotchas

The Reactome database is vast and complex. Be specific with your queries to get more targeted results; broad requests may return a large amount of data.