Reactome Database
Visualize and explore Reactome pathway data directly within your microck environment for rapid biological insights.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add microck-reactome-database npx -- -y @trustedskills/microck-reactome-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"microck-reactome-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/microck-reactome-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to and querying capabilities for the Reactome database, a curated knowledgebase of biological pathways. It allows users to retrieve information about genes, proteins, pathways, and their relationships within biological processes. The skill can be used to explore complex biological systems and identify potential targets for research or drug development.
When to use it
- Researching gene function: Investigate the role of a specific gene in a particular pathway.
- Understanding disease mechanisms: Explore how disruptions in Reactome pathways contribute to disease progression.
- Identifying drug targets: Discover potential therapeutic interventions by targeting key nodes within biological pathways.
- Analyzing protein interactions: Determine which proteins interact with each other and participate in shared pathways.
Key capabilities
- Querying the Reactome database for specific genes or proteins.
- Retrieving pathway information associated with a given gene or protein.
- Exploring relationships between biological entities within Reactome.
Example prompts
- "What pathways does the BRCA1 gene participate in?"
- "Show me all proteins involved in the MAPK signaling pathway."
- “Find genes related to apoptosis.”
Tips & gotchas
The Reactome database is vast and complex. Be specific with your queries to get more targeted results; broad requests may return a large amount of data.
Tags
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