Pdb Database
Queries and analyzes Protein Data Bank (PDB) databases for structural biology data and insights.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add moosegoose0701-pdb-database npx -- -y @trustedskills/moosegoose0701-pdb-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"moosegoose0701-pdb-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/moosegoose0701-pdb-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill allows AI agents to interact with a PDB (Protein Data Bank) database. It can retrieve information about protein structures, including experimental data and metadata. The agent can use this skill to answer questions related to specific proteins or perform analyses based on structural data.
When to use it
- Scientific Research: An agent assisting researchers in finding relevant protein structure data for a study.
- Drug Discovery: An agent identifying potential drug targets by analyzing the structures of target proteins.
- Education: An agent explaining protein structures and related concepts to students.
- Bioinformatics Analysis: An agent automating tasks involving querying and retrieving information from PDB entries.
Key capabilities
- Accesses Protein Data Bank (PDB) data.
- Retrieves experimental data for protein structures.
- Provides metadata associated with PDB entries.
Example prompts
- "Find the PDB entry for insulin."
- "What is the resolution of the structure in PDB ID 1AKE?"
- "Give me a list of all proteins containing hemoglobin."
Tips & gotchas
The skill's effectiveness depends on accurate and complete PDB identifiers (IDs). Ensure that prompts include valid PDB IDs for optimal results.
Tags
TrustedSkills Verification
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.