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Omero Integration

Listed
davila7·vlatest·data·MIT

Connects to Davila7's Omero system for automated image data retrieval, analysis, and reporting workflows.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add davila7/claude-code-templates --skill omero-integration -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

davila7

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

Nobody has reviewed this code. TrustedSkills indexes and links skills; it does not audit, run or scan them. A skill runs with whatever access you give your agent — read the source before you install it.

Automated safety checks

scanned

We could not read this skill's source, so none of the checks below were run.

Not scanned. none of the 457 skills in the repository match this slug — it was most likely renamed or removed upstream after the registry indexed it Source recorded as davila7/claude-code-templates.
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About this skill

What it does

This skill enables AI agents to interact with and retrieve data from OMERO, a powerful open-source scientific imaging platform. It facilitates programmatic access to images, metadata, and other related information stored within an OMERO server. Specifically, the agent can query for images based on various criteria and potentially perform basic operations.

When to use it

  • Automated image analysis: Retrieve specific images from a large dataset for automated processing or machine learning tasks.
  • Data curation workflows: Automatically extract metadata about images and update associated records in other systems.
  • Scientific research: Enable researchers to programmatically access and analyze imaging data without manual intervention.
  • Inventory management: Query OMERO for image availability based on specific parameters, aiding in resource allocation.

Key capabilities

  • OMERO server connection
  • Image querying by metadata
  • Data retrieval from OMERO repositories

Example prompts

  • "Find all images with the label 'mitosis' and a date after 2023-10-26."
  • "Retrieve the image series named 'ZStack_001' from server address [server address]."
  • “List all files in the repository ‘MyRepository’ that have the tag ‘DAPI’.”

Tips & gotchas

  • Requires a valid OMERO server connection string, including username and password.
  • The agent’s ability to perform complex operations within OMERO is limited by the skill's current implementation.