Skip to content
TrustedSkillsbeta
Back to all skills

Ensembl Database

Listed
ovachiever·vlatest·database

Queries and synthesizes data from diverse databases to identify trends, anomalies, and actionable insights for optimal performance.

Repository

Install on your platform

Showing Claude Code. One command installs this skill into any of the agents below.

  1. 1

    Run this in your project

    terminal
    $ npx skills add ovachiever/droid-tings --skill ensembl-database -a claude-code

  2. Uses the open-source skills CLI and needs Node.js. Add -g to install it for your user instead of this project.

What we know about this skill

Publisher

ovachiever

Taken from the source listing. We haven't verified who controls this account.

Install target

Live repository

Not pinned. Installing fetches whatever the repository holds at the time you run the command.

No human has reviewed this code. The checks below are a static scan of the files at one commit — nobody has run this skill or judged whether it works. A skill runs with whatever access you give your agent, so read the source before you install it.

Automated safety checks

scanned

This skill failed 1 of 6 checks. A failure is not proof of bad intent; it means something in the code needs a human to look at it before you run it.

  • No undeclared network calls: failed

    Contacts 2 hosts that are neither well-known infrastructure nor declared in the skill's frontmatter: grch37.rest.ensembl.org, rest.ensembl.org.

    Every host the skill dials — from its scripts, its config endpoints or the commands it tells the agent to run — is either well-known package and API infrastructure or declared in its own frontmatter. Links in documentation are not counted.

    Hosts contacted

    rest.ensembl.orgundeclaredgrch37.rest.ensembl.orgundeclared

    What it found

    • skills/ensembl-database/scripts/ensembl_query.py:22contacts rest.ensembl.org
      def __init__(self, server: str = "https://rest.ensembl.org", rate_limit: int = 15):
    • skills/ensembl-database/scripts/ensembl_query.py:356contacts rest.ensembl.org
      server = "https://rest.ensembl.org"
    • skills/ensembl-database/scripts/ensembl_query.py:358contacts grch37.rest.ensembl.org
      server = "https://grch37.rest.ensembl.org"

  • Declares what it does: passed

    SKILL.md parses and declares a name and a description.

    SKILL.md exists, its frontmatter parses, and it declares a name and a description.

  • No obfuscated payloads: passed

    No encoded or obfuscated payloads.

    No base64, hex or compressed blob is decoded and then executed, and no encoded shell commands.

  • No credential access: passed

    Reads no keys, tokens, keychains or credential files.

    Neither the code nor the SKILL.md instructions read SSH keys, cloud credentials, keychains, token stores, browser cookie databases or dotfiles that hold secrets.

  • No pipe-to-shell installers: passed

    No pipe-to-shell or download-and-run installers.

    No `curl … | sh` pattern, in the code or in the instructions, that runs code fetched at run time.

  • Pinned to a commit: passed

    Scanned ovachiever/droid-tings at 7acd12a754.

    The exact upstream commit SHA that was scanned is recorded, so the result refers to specific bytes.

Commit
7acd12a754
Manifest
skills/ensembl-database/SKILL.md
Scanned
3 files, 1,059 lines
This is a static scan, not a review. It reads the skill's files; it does not run them, and it cannot tell you whether the skill is any good or whether the code does what its description says. A skill runs with whatever access you give your agent.
What each check looks for →

About this skill

What it does

This skill allows AI agents to query and retrieve data from the Ensembl database, a comprehensive resource for genomic information. It enables access to gene annotations, sequence data, variant information, and more. The agent can use this skill to answer specific biological questions or perform analyses requiring detailed genomic data.

When to use it

  • Researching gene function: Retrieve information about a specific gene's properties, including its location, transcripts, and associated pathways.
  • Analyzing genetic variants: Identify the impact of known variations on gene expression or protein structure.
  • Exploring species genomes: Access genomic data for various organisms supported by Ensembl.
  • Building custom bioinformatics tools: Integrate Ensembl data into larger pipelines or applications.

Key capabilities

  • Gene annotation retrieval
  • Sequence data access
  • Variant information lookup
  • Species genome exploration

Example prompts

  • "What is the genomic location of the BRCA1 gene?"
  • "Retrieve the sequence of exon 5 in the human TP53 gene."
  • "Show me all known variants affecting the hemoglobin beta (HBB) gene."

Tips & gotchas

  • Ensembl uses specific identifiers for genes and other elements. Familiarity with these identifiers will improve query accuracy.
  • The skill's performance depends on the Ensembl database’s availability and response time.