Metabolomics Workbench Database
Access and query a comprehensive metabolomics data workbench database for advanced analysis and insights.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add ovachiever-metabolomics-workbench-database npx -- -y @trustedskills/ovachiever-metabolomics-workbench-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"ovachiever-metabolomics-workbench-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/ovachiever-metabolomics-workbench-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill provides access to the Metabolomics Workbench database, a public repository for metabolomics data. It allows users to search and retrieve experimental datasets, sample metadata, and associated analytical results. The database supports various metabolomics file formats and analysis pipelines, enabling researchers to explore and reuse existing data.
When to use it
- Finding publicly available metabolomics datasets for validation or comparison with your own research.
- Searching for specific metabolites or experimental conditions within the Metabolomics Workbench repository.
- Accessing sample metadata associated with published metabolomics experiments.
- Identifying analytical pipelines used in previously published studies.
Key capabilities
- Database search functionality
- Data retrieval of experimental datasets
- Access to sample metadata
- Support for various metabolomics file formats
Example prompts
- "Find all metabolomics datasets related to E. coli."
- "Show me the sample metadata for dataset MWDB-XXXXX."
- "What analytical pipelines were used in study XYZ?"
Tips & gotchas
The Metabolomics Workbench database requires familiarity with metabolomics terminology and data formats. Results may require further processing or analysis depending on the specific research question.
Tags
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
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