Pdb
The PDB skill extracts protein structures from scientific papers, streamlining research by providing immediate structural data.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add pdb npx -- -y @trustedskills/pdb
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"pdb": {
"command": "npx",
"args": [
"-y",
"@trustedskills/pdb"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
The pdb skill provides capabilities related to protein design. It allows users to interact with and manipulate protein structures, likely through a series of prompts and actions. The specific functionalities revolve around the manipulation and analysis of proteins within a computational environment.
When to use it
- When you need to explore different protein sequences for potential modifications.
- To analyze existing protein structures and identify areas suitable for design interventions.
- For generating variations of a protein structure based on specified criteria.
- If you're working with protein engineering workflows that require iterative design cycles.
Key capabilities
- Protein sequence manipulation
- Structure analysis
- Design intervention suggestions
- Variation generation
Example prompts
- "Suggest mutations to improve the stability of this protein."
- "Analyze the structure and identify potential binding sites."
- "Generate 10 variations of this protein with increased hydrophobicity."
- "What are the key structural features influencing this protein's function?"
Tips & gotchas
This skill likely requires familiarity with protein structures and basic bioinformatics concepts to effectively utilize its capabilities. The specific input formats and output interpretations may require some experimentation to optimize results.
Tags
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