Pdb Database
Access and query protein data banks like PDB using structured queries to retrieve experimental structural information.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add pdb-database npx -- -y @trustedskills/pdb-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"pdb-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/pdb-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
pdb-database
What it does
This skill enables AI agents to interact directly with Python debugging databases, allowing them to inspect breakpoints, variables, and call stacks during runtime. It bridges the gap between code execution and deep diagnostic analysis within the Python ecosystem.
When to use it
- Debugging complex logic errors where standard print statements are insufficient.
- Inspecting variable states at specific breakpoints in a running script.
- Analyzing call stacks to trace the origin of unexpected exceptions.
- Reviewing local and global scopes during an active debugging session.
Key capabilities
- Access to Python debugger (pdb) database structures.
- Inspection of current execution context and frame information.
- Retrieval of variable values and object states at pause points.
- Navigation through call stack frames for root cause analysis.
Example prompts
- "Show me the value of
user_datain the current frame." - "List all variables defined in the global scope right now."
- "Trace back through the call stack to find where this exception originated."
Tips & gotchas
Ensure your target Python script is running with the debugger attached before querying for state information. This skill relies on active breakpoints; it cannot inspect a program that has already finished execution unless specific history data is preserved.
Tags
TrustedSkills Verification
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Security Audits
| Gen Agent Trust Hub | Pass |
| Socket | Pass |
| Snyk | Pass |
🌐 Community
Passed automated security scans.