Reactome Database
Visualize and explore Reactome pathway data directly within your application using this interactive database integration.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add reactome-database npx -- -y @trustedskills/reactome-database
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"reactome-database": {
"command": "npx",
"args": [
"-y",
"@trustedskills/reactome-database"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
The Reactome Database skill enables AI agents to query and retrieve curated biological pathway information, including gene interactions, protein complexes, and reaction mechanisms. It provides direct access to structured data regarding human molecular signaling networks and metabolic processes for research analysis.
When to use it
- Investigating specific signaling cascades or metabolic routes in human biology.
- Validating gene-protein relationships within known biological pathways.
- Extracting structured pathway data to populate scientific visualizations or reports.
- Cross-referencing reaction mechanisms with associated gene identifiers.
Key capabilities
- Querying curated human pathway data from the Reactome database.
- Retrieving detailed information on reactions, complexes, and genes.
- Accessing structured biological knowledge for computational analysis.
Example prompts
- "Retrieve all genes involved in the PI3K-AKT signaling pathway."
- "List the protein complexes associated with the glycolysis process."
- "Find the reaction mechanisms linked to gene ID ENSG00000141510."
Tips & gotchas
This skill is specialized for human biology; queries regarding non-human species or uncurated experimental data may not yield results. Ensure you provide specific pathway names or gene identifiers to maximize retrieval accuracy.
Tags
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