Tooluniverse Metabolomics
Analyzes complex metabolic data to identify biomarkers and understand biological pathways, aiding in research & diagnostics.
Install on your platform
We auto-selected Claude Code based on this skill’s supported platforms.
Run in terminal (recommended)
claude mcp add tooluniverse-metabolomics npx -- -y @trustedskills/tooluniverse-metabolomics
Or manually add to ~/.claude/settings.json
{
"mcpServers": {
"tooluniverse-metabolomics": {
"command": "npx",
"args": [
"-y",
"@trustedskills/tooluniverse-metabolomics"
]
}
}
}Requires Claude Code (claude CLI). Run claude --version to verify your install.
About This Skill
What it does
This skill, Tooluniverse Metabolomics, is designed to assist with metabolomics research by identifying metabolites, retrieving study information, and searching relevant databases. It analyzes complex metabolic data to provide structured reports containing annotated metabolite information, study details, and database statistics. The skill follows a four-phase analysis pipeline covering metabolite identification, study retrieval, study search, and database overview.
When to use it
- When you need to identify or annotate metabolites (e.g., find HMDB IDs or pathways).
- To retrieve detailed information about metabolomics studies from MetaboLights or Metabolomics Workbench.
- When searching for metabolomics studies related to a specific keyword or disease.
- For analyzing metabolite profiles or datasets.
- To generate comprehensive research reports summarizing metabolomics findings.
Key capabilities
- Metabolite Identification & Annotation: Identifies metabolites and retrieves information like HMDB IDs, chemical formulas, molecular weights, pathways, and PubChem CIDs.
- Study Details Retrieval: Retrieves metadata (title, description, organism, status) for studies from MetaboLights and Metabolomics Workbench.
- Study Search: Searches MetaboLights for studies based on keywords or disease terms.
- Database Coverage: Integrates with HMDB, MetaboLights, Metabolomics Workbench, and PubChem.
Example prompts
- "What is the HMDB ID and pathway information for glucose?"
- "Get study details for MTBLS1"
- "Find metabolomics studies related to diabetes"
- "Analyze these metabolites: glucose, lactate, pyruvate"
Tips & gotchas
- The skill utilizes a four-phase analysis pipeline. Understanding this structure can help interpret the results.
- If HMDB data is unavailable for a metabolite, the skill will fall back to PubChem.
Tags
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| Socket | Pass |
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